Journal Publications

Papers in Journals:

  1. Shi, F., Simpson, A., and Hsu, T., 2024, Modeling lobe-and-cleft instabilities on a river plume, Journal of Geophysical Research - Oceans, DOI:10.1029/2023JC020485

  2. Malej, M. and Shi, F., 2024, Modeling the optical signature induced by surfzone bubbles using the Boussinesq-type wave model FUNWAVE-TVD, Ocean Engineering, 307, 118160, DOI:10.1016/j.oceaneng.2024.118160

  3. Chen, Y., Shi, F., Kirby, J. T., Liang, B., Wu, G., and Deb, M., 2023, Reducing impacts of artificial ponding in modeling salt marshes using a conductivity-formulated subgrid model, Estuarine, Coastal and Shelf Science, DOI:10.1016/j.ecss.2023.108441

  4. Sun, Q., Wang, Q., Shi, F., Alves, T., Gao, S., Xie, X., Wu, S., and Li, J., 2022, Runup of landslide-generated tsunamis controlled by paleogeography and sea-level change, Nature Communications Earth & Environment, DOI:10.1038/s43247-022-00572-w

  5. Zhang, Y., Shi, F., Kirby, J. T., and Feng, X., 2022, Phase-resolved modeling of wave interference and its effects on nearshore circulation in a large ebb shoal-beach system, Journal of Geophysical Research - Ocean, DOI:10.1029/2022JC018623

  6. Choi, Y.-K., Shi, F., Malej, M., Smith, J. M., Kirby, J. T., and Grilli, S. T.: Block-structured, equal-workload, multi-grid-nesting interface for the Boussinesq wave model FUNWAVE-TVD (Total Variation Diminishing), 2022, Geosci. Model Dev., 15, 5441–5459, DOI:10.5194/gmd-15-5441-2022

  7. Everett C.L., Williams O., Ruggiero E., Larner M., Schaefer R., Malej M., Shi F.,Bruck J. and Puleo J.A., 2022, Ship wake forcing and performance of a living shoreline segment on an estuarine shoreline. Front. Built Environ. 8:917945.`DOI: 10.3389/fbuil.2022.917945 <https://doi.org/10.3389/fbuil.2022.917945>`_

  8. Deb, M., Abdolali, Kirby, J. T., Shi, F., and Guiteras, S., 2022. Hydrodynamic modeling of a complex salt marsh system: Importance of channel shoreline and bathymetric resoluton, Coastal Engineering, Volume 173, April 2022, 104094, DOI:10.1016/j.coastaleng.2022.104094

  9. Zhu, J., Shi, F., Cai, F., Wang, Q., Qi, H., Zhan, C., Liu, J., Liu, G., Lei, G., 2022. Influences of beach berm height on beach response to storms: a numerical study, Applied Ocean Research, Volume 121, April 2022, 103090, DOI:10.1016/j.apor.2022.103090

  10. Simpson, A. J., Shi, F., Jurisa, J. T., Honegger, D., Hsu, T.-J., Haller, M.C., 2022. Observations and modeling of a buoyant plume exiting into a tidal cross-flow and exhibiting along-front instabilities, Journal of Geophysical Research - Ocean, DOI:10.1029/2021JC017799

  11. Luo, Y., Zhang, C., Liu, J., Xing, H., Zhou, F., Wang, D., Long, X., Wang, S., Wang, W., Shi, F., 2022. Identifying ship-wakes in a shallow estuary using machine learning, Ocean Engineering, 246, 110456. DOI:10.1016/j.oceaneng.2021.110456

  12. Kirby, J. T., Grilli, S., T., Horrillo, J., Liu, P., L.-F., Nicolsky,D., Abadie, S., Ataie-Ashtiani, B., Castro, M., J., Clous, L., Escalante, C., Fine, I., Gonz ́alez-Vida, J. M., Løvholt, F., Lynett, P., Ma, G., Mac ́ıas, J., Ortega, S., Shi, F., Yavari-Ramshe, S., Zhang, C., 2022, Validation and inter-comparison of models for landslide tsunami generation, Ocean Modelling, Vol.170, 101943. DOI:10.1016/j.ocemod.2021.101943

  13. Deb, M., Abdolali, A., Kirby, J. T., Shi, F., Guiteras, S., McDowell, C., 2021 Sensitivity of tidal hydrodynamics to varying bathymetric configurations in a multi-inlet rapidly eroding salt marsh system: A numerical study, Earth Surface Processes and Landforms, DOI:10.1002/esp.5308

  14. Salatin, R., Chen, Q., Bak, A. S., Shi, F., and Brandt, S. R., 2021, Effects of Wave Coherence on Longshore Variability of Nearshore Wave Processes, Journal of Geophysical Research - Ocean, DOI:1029/2021JC017641

  15. Malej, M., Shi, F., Smith, J. M., Cuomo, G., and Tozer, N., 2021, Boussinesq-type modeling of low-frequency wave motions at Marina di Carrara, Journal of Waterway, Port, Coastal and Ocean Engineering, 147(6): 05021015, DOI:10.1061/(ASCE)WW.1943-5460.0000676

  16. Zhang, C, Kirby, J. T., Shi, F., Ma, G., and Grilli, S., 2021, A two-layer non-hydrostatic landslide model for tsunami generation on irregular bathymetry. Part 2. Numerical discretization and model validation., Ocean Modelling, DOI:10.1016/j.ocemod.2021.101769

  17. Ye, Z., Shi, F., Zhao X., Hu, Z., and Malej, M., 2021, A data-driven approach to modeling subgrid-scale shallow marshhydrodynamics, Coastal Engineering, DOI:10.1016/j.coastaleng.2021.103856

  18. Yuan, Y., Li, H., Wei, Y., Shi, F., Wang, Z., Hou, J., Wang, P., and Xu, Z., 2021, Probabilistic Tsunami Hazard Assessment (PTHA) for southeast coast of Mainland China and Taiwan Island, Journal of Geophysical Research, Solid Earth, DOI:10.1029/2020JB020344.

  19. Wang, G., Liang, Q., and Shi, F., Zheng J., 2021, Analytical and numerical investigation of trapped ocean waves along a submerged ridge, Journal of Fluid Mechanics, DOI:10.1017/jfm.2020.1039.

  20. Zhang, C, Kirby, J. T., Shi, F., Ma, G., and Grilli, S., 2021, “A two-layer non-hydrostatic landslide model for tsunami generation on irregular bathymetry. Part 1. Theoretical basis.”, Ocean Modelling, DOI:10.1016/j.ocemod.2020.101749.

  21. Forlini, C., Qayyum, R., Malej, M., Lam, M.-A. Shi, F. Angelini, C. Sheremet, 2020. A., On the Problem of Modeling the Boat Wake Climate; the Florida Intracoastal Waterway, Journal of Geophysical Research - Oceans, DOI: 10.1029/2020JC016676.

  22. Tehranirad, B., Kirby, J. T., and Shi, F., 2020, A model for tsunami-induced morphology adjustment, Pure and Applied Geophysics, DOI: 10.1007/s00024-020-02614-w.

  23. Grilli, A., Westcott, G., Grilli, S., Spaulding, M., Shi, F., and Kirby, J.T.,2020, Assessing coastal risk from extreme storms with a phase resolving wave model: Case Study of Narragansett, RI, USA, Coastal Engineering, DOI: 10.1016/j.coastaleng.2020.103735.

  24. Puleo, J. A., Cristaudo, D., Torres-Freyermuth, A., Masselink, G., and Shi, F., 2020, The role of alongshore flows on inner surf and swash zone hydrodynamics on a dissipative beach, Continental Shelf Research, DOI: 10.1016/j.csr.2020.104134.

  25. Yuan, Y., Shi, F., Kirby, J. T., and Yu, F., 2020, “Multiple-GPU acceleration of the Boussinesq-type wave model FUNWAVE-TVD”, Journal of Advances in Modeling Earth Systems, doi: 10.1029/2019MS001957

  26. Bao, J., Cai, F., Shi, F., Zheng, Y., Lu, H., Wu, C., 2020， “Morphodynamic response of sand waves in the Taiwan Shoal to a passing tropical storm”, Marine Geology, doi: 10.1016/j.margeo.2020.106196

  27. Chen, Y., Shi, F., Kirby, J. T., and Liang, B., 2020, “A computationally efficient subgrid model for coupledsurface and groundwater flows”, Coastal Engineering, 157, 103665, DOI: 10.1016/j.coastaleng.2020.103665.

  28. Liu, W., Ning, Y., Shi, F., and Sun Z., 2020 “A 2DH fully dispersive Boussinesq-type model based on a finite-volume and finite-difference TVD-type scheme”, Ocean Modelling, 47, DOI: 10.1016/j.ocemod.2019.101559.

  29. Li, L., Shi, F., Ma, G., and Qui, Q., 2019, “Tsunamigenic potential of Baiyun submarine landslide in the South China Sea”, Journal of Geophysical Research: Solid Earth, DOI:10.1029/2019JB018062.

  30. Zhu, J., Cai, F., Shi, F., Qi, H., Lei, G., Liu, J., Cao, H., and Zheng, J., 2019, “Beach response to layout of drainage pipe outlet during beach nourishment”, Estuarine, Coastal and Shelf Science, DOI: 10.1016/j.ecss.2019.106354.

  31. Shi, J., Shi, F., Kirby, J. T., Zheng, J., Zhang, C., and Malej, M., 2019, “Interplay between grid resolution and pressure decimation in non-hydrostatic modeling of internal waves”, Ocean Engineering, DOI:10.1016/j.oceaneng.2019.06.014.

  32. Ding, Y. and Shi, F., 2019, “An analytical solution for nearshore circulation driven by focused/defocused waves”, China Ocean Engineering, 33, 544-553, DOI:10.1016/10.1007/s13344-019-0052-2.

  33. Choi Y.-K., Seo S.-N., Choi J.-Y., Shi F., Park K.-S., 2019, “Wave prediction in a port using a fully nonlinear Boussinesq wave model”, Acta Oceanol. Sin., 38 (7), 1-12. DOI:10.1007/s13131-019-1456-2.

  34. Choi, Y.-K., Shi, F., Malej, M., and Smith, J. M., 2018, “Performance of various shock-capturing-type reconstruction schemes in the Boussinesq wave model, FUNWAVE-TVD”, Ocean Modelling, 131, 86-100. DOI:10.1016/j.ocemod.2018.09.004.

  35. Wu, G., Shi, F., Kirby, J. T., Shi, J., and Liang, B., 2018, “Modeling wave effects on storm surge and coastal inundation”, Coastal Engineering, DOI:10.1016/j.coastaleng.2018.08.011.

  36. Lu, Y., Shi, F., Kobayashi, N., Malej, M., Zhu, T., and Feng, W., 2018, “Numerical investigation of excessive surge induced by wave overtopping in an inlet-bay system”, Coastal Engineering, DOI:10.1016/j.coastaleng.2018.08.009.

  37. Schambach, L., Grilli, S. T., Kirby, J. T., and Shi, F., 2018, “Landslide tsunami hazard along the upper US East Coast: effects of slide rheology, bottom friction and frequency dispersion”, Pure and Applied Geophysics, doi:10.1007/s00024-018-1978-7

  38. Wargula, A., Raubenheimer, B., Elgar, S., Chen, J.-L., Shi, F., and Traykovski, P., 2018, “Flow asymmetry owing to inertia and waves on an unstratified, shallow ebb shoal”, Journal of Geophysical Research: Oceans, DOI:10.1029/2017JC013625

  39. Orzech, M.D., Shi, F., Bateman, S., Veeramony, J., Calantoni, J., and Kirby, T.J., 2018, “A coupled system for investigating the physics of wave-ice interactions”, Journal of Atmospheric and Oceanic Technology, doi:10.1175/JTECH-D-17-0189.1.

  40. Shi, F., Malej, M., Smith, J. M., and Kirby, J. T., 2018, “Breaking of ship bores in a Boussinesq-type ship-wake model”, Coastal Engineering, doi:10.1016/j.coastaleng.2017.11.002.

  41. Kukulka, T.,Jenkins, R. L., Kirby, J. T., Shi, F. and Scarborough, R. W., 2017, “Surface wave dynamics in Delaware Bay and its adjacent coastal shelf”, Journal of Geophysical Research: Oceans, doi:10.1002/2017JC013370

  42. Lynett P., et al., 2017, “Inter-Model Analysis of Tsunami-Induced Coastal Currents”, Ocean Modelling, doi:10.1016/j.ocemod.2017.04.003

  43. Chakrabarti, A., Brandt, S. R., Chen, Q., and Shi, F., 2017, “Boussinesq modeling of wave induced hydrodynamics in coastal wetlands during Hurricane Isaac”, Journal of Geophysical Research: Oceans, DOI: 10.1002/2016JC012093

  44. Zhou, Z., Yu, X., Hsu, T.-J., Shi, F., Geyer, W. R. and Kirby, J. T., 2017, “Large eddy simulation of idealized river plumes at high Reynolds number”, Journal of Geophysical Research: Oceans , DOI: 10.1002/2016JC012334

  45. Wu, G., Li, H., Liang, B., Shi, F.,Kirby, J. T., and Mieras, R., 2017, “Subgrid Modeling of Salt Marsh Hydrodynamics with Effects of Vegetation and Vegetation Zonation”, Earth Surface Processes and Landforms, DOI:10.1002/esp.4121

  46. Shi, F., Chickadel, C., Hsu, T.-J., Kirby, J. T., Farquharson, G. and Ma, G., 2017, “Frontal features of the Columbia River mouth seen from a high-resolution non-hydrostatic model”, Estuarines and Coasts, 40, 296-309, DOI 10.1007/s12237-016-0132-y

  47. Grilli, S. T., Shelby, M., Kimmoun, O., Dupont, G., Nicolsky, D., Ma, G., Kirby, J. T. and Shi, F., 2017, “Modeling coastal tsunami hazard from submarine mass failures: effect of slide rheology, experimental validation, and case studies off the US East Coast”, Natural Hazards, doi:10.1007/s11069-016-2692-3

  48. Kirby, J. T., Shi, F., Nicolsky, D. and Misra, S., 2016, “The 27 April 1975 Kitimat, British Columbia submarine landslide tsunami: A comparison of modeling approaches”, Landslides, 13, 1421-1434, doi:10.1007/s10346-016-0682-x.

  49. Schnyder, J. S. D., Eberli, G. P., Kirby, J. T., Shi, F., Tehranirad, B., Mulder, T., Ducassou, E., H ebbeln, D. and Wintersteller, P., 2016, “Tsunamis caused by submarine slope failures along western Gr eat Bahama Bank”, Scientific Reports (Nature) , 6, 35925, doi:10.1038/srep35925.

  50. Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “NHWAVE: Consistent boundary conditions and turbulence modeling”, Ocean Modelling, 106, 121-130, doi: 10.1016/j.ocemod.2016.09.002.

  51. Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model, Part 1: Organized wave motions”, Ocean Modeling, 107, 125-138, doi: 10.1016/j.ocemod.2016.09.001.

  52. Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model, Part 2: Turbulence and mean circulation”, Ocean Modeling, doi: 10.1016/j.ocemod.2016.09.011.

  53. Ma, G., Farahani, A. A., Kirby, J. T., Shi, F., 2016, Modeling wave-structure interactions by an immersed boundary method in a sigma-coordinate model, Ocean Engineering, 125, 238-247. doi:10.1016/j.oceaneng.2016.08.027.

  54. Son, S. Jung, T.-H., and Shi, F., 2016, “Vertical structure of rip-currents in the nearshore Circulation”, Journal of Coastal Research , Special issue, 72, 1402-1406, doi:10.2112/SI75-281.1.

  55. Orzech, M., Shi, F., Veeramony, J., Bateman, S., Calantoni, J. and Kirby, J. T., 2016, “Incorporating floating surface objects into a fully dispersive surface wave model”, Ocean Modelling, 102, 14-26, doi:10.1016/j.ocemod.2016.04.007.

  56. Wu, G., Shi, F., Kirby, J. T., Mieras, R., Liang, B., Li, H. and Shi, J., 2016, “A pre-storage, subgrid model for simulating flooding and draining processes in salt marshes”, 49 Coastal Engineering, 108, 65-78, doi:10.1016/j.coastaleng.2015.11.008.

  57. Shi, J., Shi, F., Kirby, J. T. Gu, G. and Ma, G., 2015, “Pressure decimation and interpolation (PDI) method for a baroclinic non-hydrostatic model”, Ocean Modelling, 96, 265-279, doi:10.1016/j.ocemod.2015.09.010.

  58. Ma, G., Kirby, J. T., Hsu, T.-J. and Shi, F., 2015, “A two-layer granular landslide model for tsunami wave generation: Theory and computation”, Ocean Modelling, 93. 40-55, doi:10.1016/j.ocemod.2015.07.012.

  59. Tehranirad, B., Harris, J. C., Grilli, A. R., Grilli, S. T., Abadie, S., Kirby, J. T. and Shi, F., 2015, “Far-field tsunami hazard on the western European and US east coast from a large scale flank collapse of the Cumbre Vieja volcano, La Palma”, Pure and Applied Geophysics, doi:10.1007/s00024-015-1135-5.

  60. Chen, J., Hsu, T., Shi, F., Raubenbeimer, B., and Elgar, S., 2015, “Hydrodynamic and sediment transport modeling of New River Inlet (NC) under the interaction of tides and waves”, J. Geophy. Res. , doi:10.1002/2014JC010425.

  61. Goncharenko, Y.V., Farquharson, G., Shi, F., Raubenheimer, B., Elgar, S.,2015,”Estimation of Shallow-water Breaking Wave Height from Synthetic Aperture Radar”,Geosicence and Remote Sensing Letters, doi:10.1109/LGRS.2015.2445492.

  62. Shi, F., Vittori, G. and Kirby, J. T., 2015, “Concurrent correction method for modeling morphological response to dredging an offshore sandpit”, Coastal Engineering , 97,1-10, doi:10.1016/j.coastaleng.2014.12.008.

  63. Keshtpoor, M., Puleo, J. A., Shi, F. and Ma, G., 2015,”3D Numerical Simula tion of Turbulence and Sediment Transport within a Tidal Inlet”, Coastal Engineering, 96,13-26, doi:10.1016/j.coastaleng.2014.10.009.

  64. Grilli, S. T., O’Reilly, C., Harris, J. C., Tajalli Bakhsh, T., Tehra nirad, B., Banihashemi, S., Kirby, J. T., Baxter, C. D. P., Eggeling, T., Ma , G. and Shi, F., 2015 “Modeling of SMF tsunami hazard along the upper U. S. East Coast: Detailed impact around Oc ean City, MD”, Nat. Hazards, doi:10.1007/s11069-014-1522-8.

  65. Tappin, D. R., Grilli, S. T., Harris, J. C., Geller, R. J., Masterlark, T., Kirby, J. T., Shi, F., Ma, G., Thingbaijam, K. K. S. and Mai, P. M., 2014, “Did a submarine landslide contribute to the 2011 Tohoku tsunami?”, Marine Geology, doi:10.1016/j.margeo.2014.09.043.

  66. Chen, J., Shi, F., Hsu, T.-J., and Kirby, J. T., 2014,”NearCoM-TVD - a quasi-3D nearshore circulation and sediment transport model”, Coastal Engineering, 91, 200-212, doi:10.1016/j.coastaleng.2014.06.002.

  67. Keshtpoor, M., Puleo, J. A., Shi, F. and DiCosmo, N., 2014, “Numerical simulation of nearshore hydrodynamics and sediment transport downdrift of a tidal inlet”, Journal of Waterway, Port, Coastal and Ocean Engineering, doi:10.1061/(ASCE)WW.1943-5460.0000273.

  68. Ma, G., Shi, F., Hsiao, S.-C., and Wu Y.-T.,2014, “Non-dydrostatic modeling of wave interaction with porous structures”, Coastal Engineering, 91, 84-98, doi:10.1016/j.coastaleng.2014.05.004.

  69. Hansen, J. E., Janssen, T. T., Raubenheimer, B., Shi, F., Barnard, P., and Jones, I. S., 2014, “Observations of surfzone alongshore pressure gradients onshore of an ebb-tidal delta”, Coastal Engineering, 91, pp. 251-260, doi:10.1016/j.coastaleng.2014.05.010.

  70. Ma, G., Chou, Y.-J. and Shi, F., 2014, “A wave-resolving model for nearshore suspended sediment transport”, Ocean Modelling, 77, 2014, 33-49, doi:10.1016/j.ocemod.2014.03.003.

  71. Keshtpoor, M., Puleo, J. A., Shi, F., 2014, “Downdrift beach erosion adjacent to the Indian River Inlet, Delaware, USA”, Shore & Beach, Vol. 82, No. 1-11.

  72. Ma, G., Shi, F., Liu, S. and Qi, D., 2013,”Migration of sediment deposition due to the construction of large-scale structures in Changjiang Estuary”, Applied Ocean Research, 43, 148-156, doi:10.1016/j.apor.2013.09.002.

  73. Ma, G., Kirby, J. T. and Shi, F., 2013, “Numerical simulation of tsunami waves generated by deformable submarine landslides”, Ocean Modelling, 69, 146-165, doi:10.1016/j.ocemod.2013.07.001.

  74. Ma, G., Kirby, J T., Su, S. F., Figlus, J. and Shi, F., 2013, “Numerical study of turbulence and wave damping induced by vegetation canopies”, Coastal Engineering, 80, 68-78, doi:10.1016/j.coastaleng.2013.05.007.

  75. Shi, F., Cai, F., Kirby, J. T. and Zheng, J., 2013, “Morphological modeling of a nourished bayside beach with a low tide terrace”, Coastal Engineering, 78, 23-34, doi:10.1016/j.coastaleng.2013.03.005.

  76. Sawyer, A. H., Shi, F., Kirby, J. T. and Michael, H. A., 2013, “Dynamic response of surface water-groundwater exchange to currents, tides and waves in a shallow estuary’’, J. Geophys. Res., 118, doi:10.1002/jgrc.20154.

  77. Kirby, J. T., Shi, F. Harris, J. C., and Grilli, S. T., 2013, “Dispersive tsunami waves in the ocean: Model equations and sensitivity to dispersion and Coriolis effects”, Ocean Modeling , 62, 39-55, doi:10.1016/j.ocemod.2012.11.009.

  78. Grilli, S. T., Harris, J. C., Tajalibakhsh, T., Masterlark, T. L., Kyriakopoulus, C., Kirby, J. T. and Shi, F., 2012, “Numerical simulation of the 2011 Tohoku tsunami based on a new transient FEM co-seismic source”, Pure and Applied Geophysics, doi:10.1007/s00024-012-0528-y.

  79. Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D. and Grilli, S. T., 2012, “A high-order adaptive time-stepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation”, Ocean Modelling, 43-44, 36-51, doi:10.1016/j.ocemod.2011.12.004.

  80. Ma, G., Shi, F. and Kirby, J. T., 2012, “Shock-capturing non-hydrostatic model for fully dispersive surface wave processes”, Ocean Modelling, 43-44, 22-35, doi:10.1016/j.ocemod.2011.12.002.

  81. Shi., F., Hanes, D. M., Kirby, J. T., and Erikson, L., Barnard, P., and Eshleman, J., 2011, Pressure gradient-driven nearshore circulation on a beach influenced by an adjacent large inlet , J. Geophys. Res., doi:10.1029/2010JC006788.

  82. Ma, G., Shi, F., and Kirby, J. T., 2011, A polydisperse two-fluid model for surfzone bubble simulation, J. Geophys. Res. , doi:10.1029/2010JC006667.

  83. Ma, G., Shi, F., Qi, D., and Liu, S., 2011, Hydrodynamic modeling of Changjiang Estuary: model skill assessment and large-scale structure impacts, Applied Ocean Research , 33, 69-78, doi:10.1016/j.apor.2010.10.004.

  84. Shi, F., Kirby, J. T., and Ma, G., 2010, Modeling quisecent phase transport of air bubbles induced by breaking waves, Ocean Modelling , 35, 105-117, doi:10.1016/j.ocemod.2010.07.002.

  85. Grilli,S.T., Dubosq, S., Pophet,N. Perignon, Y. Kirby, J. T., and Shi, F., 2010, Numerical simulation of co-seismic tsunami impact on the North shore of Puerto Rico and far-field impact on the US east coast: a first-order hazard analysis, Natural Hazards and Earth System Sciences, 10, 2109-2125, doi:10.5194/nhess-10-2109-2010.

  86. Qi, H., Cai, F., Lei, G., Cao, H., and Shi, F., 2010, The response of three main beach types to tropical storms in South China, Marine Geology, 275, 244 - 254, doi:10.1016/j.margeo.2010.06.005.

  87. Zhang, W., Shi, F., Hong, H., Shang, S. and Kirby, J. T., 2010, Tide-surge interaction intensified by the Taiwan Strait, J. Geophys. Res., 115, C06012, doi:10.1029/2009JC005762.

  88. Waythomas C.F., Watts P., Shi F., and Kirby J. T., 2009, Pacific basin tsunami hazards associated with mass flows in the Aleutian Arc of Alaska, Quaternary Science Review, 28, 11-12, 1006 - 1019, doi:10.1016/j.quascirev.2009.02.019.

  89. Smith K. A., North E. W., Shi F. Chen S-N, Sanford L., Hood R. R., Koch E. W. and Newell R. I. E., 2008, Modeling the effects of oyster reefs and breakwaters on seagrass beds, Estuaries and Caosts, 32 (4), 748-757, www.jstor.org/stable/40663579.

  90. Shi, F. and Kirby, J. T., 2008, Discussion of ‘Wave setup and setdown generated by obliquely incident waves’ by T.-W. Hsu et al, Coastal Engrng, 53, 865-877, 2006’, Coastal Engrng., 55, 1247-1249, doi:10.1016/j.coastaleng.2008.08.001.

  91. Shi, F., Kirby, J. T., Hanes, D., 2007, An efficient mode-splitting method for a curvilinear nearshore circulation model, Coastal Engineering, , 54, 811-824, doi:10.1016/j.coastaleng.2007.05.009.

  92. Chen S-N, Sanford, L. P., Koch, E. W., Shi, F., North, E. W., 2007, A nearshore model to investigate the effects of seagrass bed geometry on wave attenuation and suspended sediment transport, Estuaries and Coasts, Vol. 30, No.2, 296-310, www.jstor.org/stable/4494087.

  93. Grilli, S. T., Ioualalen, M., Asavanant, J., Shi, F., Kirby, J. T., Watts, P., 2007, Source constraints and model simulation of the December 26, 2004, Indian Ocean Tsunami, Journal of Waterway, Port, Coastal and Ocean Engineering, Special Issue on Tsunami Engineering, Vol. 133, No.6, 414-428, doi:10.1061/(ASCE)0733-950X(2007)133:6(414).

  94. Shi, F. and Kirby, J. T.,2005, Curvilinear parabolic approximation for surface wave transformation with wave-current interaction, Journal of Computational Physics , 204, 562-586, doi:10.1016/j.jcp.2004.10.022.

  95. Zheng, Q, Yuan, Y., Shen, S.S., Huang, N. E., Klemas, V., Yan, X., Shi, F., Zhang, X., Zhao, Z., Li, X., and Clemente-Colon, P., 2004, Evidence of upstream solitons and downstream wavetrain in a near resonant air flow over an island topography , International Journal of Remote Sensing , 25 (21), 4433- 4440, doi:10.1080/01431160310001609716.

  96. Kong, Y., Shi, F., and Ding P., 2004, A statistical model for predicting storm-induced sediment deposition in North-Channel at Yangtze River Mouth, Journal of ECNU (Nature Science, in Chinese), 2004 (1), 25-34.

  97. Chen, Q., Kirby, J. T., Dalrymple, R. A., Shi, F. and Thornton, E. B., 2003, Boussinesq modeling of longshore currents, J. Geophys. Res., Vol. 108, No. C11, 3362, doi:10.1029/2002JC001308.

  98. Shi,F.,Svendsen,I.A., Kirby, J.T., and Smith, J. M., 2003, A curvilinear version of a Quasi-3D nearshore circulation model, Coastal Engineering, 49 (1-2), 99-124, doi:10.1016/S0378-3839(03)00049-8.

  99. Shi, F., Kirby, J. T., Dalrymple, R. A., and Chen Q., 2003, Wave simulations in Ponce De Leon Inlet using Boussinesq model, Journal of Waterway, Port, Coastal and Ocean Engineering, 129(3), 124-135, doi:10.1061/(ASCE)0733-950X(2003)129:3(124).

  100. Shi, F., Dalrymple R. A., Kirby, J. T., Chen, Q. and Kennedy, A., 2001, A fully nonlinear Boussinesq Model in generalized curvilinear coordinates, Coastal Engineering , 42(4), 237-258, doi:10.1016/S0378-3839(00)00067-3.

  101. Shi, F., Zhu, S., Zhu, J. and Ding, P., 2000, Numerical study on residual current and its effect on mass transport in the Hangzhou Bay and the Yangtze Estuary, I. A 3-D joint model of the Hangzhou Bay and the Yangtze Estuary, ACTA Oceanologica Sinica, 22(5): 1-12.

  102. Zhu S., Ding, P., Shi, F. and Zhu, J., 2000, Numerical study on residual current and its effect on mass transport in the Hangzhou Bay and the Yangtze Estuary, II. Residual current and mass transport in winter, ACTA Oceanologica Sinica, 22(6): 1-11.

  103. Shi, F., Ding, P. and Kong, Y., 1999, A numerical fluid dynamic model using fine boundary-fitted grids in estuarine and tidal flats, China Ocean Engineering 13(2), 115-124, https://link.springer.com/journal/13344.

  104. Bao X., Sun, W. and Shi, F., 1999, A three-dimensional coastal barotropic model in generalized curvilinear grid, Chinese Journal of Oceanology and Limnology 17, 289-299, https://link.springer.com/article/10.1007%2FBF02842822.

  105. Ding, P., Shi, F. and Kong, Y., 1999, A three-dimensional diffusion equation of suspended sediment with waves and currents, Chinese Science Bulletin, 44(19), 1814-1817, https://link.springer.com/article/10.1007/BF02886167.

  106. Yu, Z., Zhang, J., Shi, F., and Wu, C., 1999, New method for evaluating toxicity of heavy metals on marine macroalgae, Oceanologia et Limnologia Sinica , 30 (2), 199-205.

  107. Shi, F., Sun, W. and Wei, G., 1998, A WDM method on generalized curvilinear grid for calculation of storm surge flooding, Applied Ocean Research, 19(4), 275-282, doi:10.1016/S0141-1187(97)00030-8.

  108. Shi, F., Ding, P. and Kong, Y., 1998, An implicit numerical model using contravariant velocity components and calculations in a harbour-channel area, ACTA Oceanologica Sinica, 17(4), 423-432.

  109. Ding, P., Kong, Y. and Shi, F., 1998, Radiation stress of water waves and its calculation, Journal of ECNU (Natural Science), 1998(1), 82-87.

  110. Ding, P., Shi, F. and Kong, Y., 1998, Numerical calculation of Combined refraction-diffraction of random waves in non-uniform currents,Journal of ECNU (Natural Science), 1998(2), 69-76。

  111. Shi, F., Sun, W. and Wei, G., 1997, A self-adaptive grid model for the simulation of moving lateral boundaries in problems involving the shallow water equations, ACTA Oceanologica Sinica, 19 (2), 1-9.

  112. Shi, F. and Sun, W., 1997, Hopscotch method in the numerical forecasting of storm surges, Journal of Ocean University of Qingdao, 27(3), 271-276.

  113. Xu, Z., Shi, F., Lou, S. and Shen, S.S., 1997, Velocities of precursor soliton generation of single-layer flow, Chin. J. Oceanol. Linmol, 15(2), 129-136, https://link.springer.com/article/10.1007/BF02850682.

  114. Xu, Z., Shi, F. and Shen, S.S., 1997, On period and amplitude of the locally forced soliton generation of single-layer flow, Progress in Nature Science, 7 (5), 574-582, https://www.tandfonline.com/loi/tpns20

  115. Shi, F. and Zheng, L., 1996, A BFG model for calculation of tidal current and diffusion of pollutants in nearshore areas, ACTA Oceanologica Sinica, 15 (2), 283-296, http://www.hyxb.org.cn/aosen/ch/reader/19960301.

  116. Xu, Z., Shi, F., Lou S. and Shen S.S., 1996, Theoretical mean wave resistance of precursor soliton generation of single-layer flow, Chin. J. Oceanol. Linmol, 14(4), 330-336, https://link.springer.com/article/10.1007/BF02850553.

  117. Xu, Z., Xu Y. and Tian J., Shi, F., 1996, On the theoretical mean wave resistance of precursor soliton generation II. Numerical calculation,Journal of Ocean University of Qingdao, 26 (2), 139-146.

  118. Shi, F. and Sun, W., 1995, Development and application of a moving boundary model in a polar coordinate transformation, Oceanol. Limnol. Sinica, 26 (4), 369-376.

  119. Shi, F. and Sun, W., 1995, A variable boundary model of storm surge flooding in generalized curvilinear grids, International Journal for Numerical Methods in Fluids, 21 (8), 642-651, doi:10.1002/fld.1650210803.

  120. Sun, W., Yang, Z. and Shi, F., 1994, On the numerical prediction models of storm surge inundation, Journal of Ocean University of Qingdao, 24 (3), 293-300.

  121. Xu, Z., Shi, F. and Shen, S.S., 1994, A numerical calculation of forced supercritical soliton in a single-layer flow, Journal of Ocean University of Qingdao, 24 (3), 309-319.

  122. Shi, F. and Sun, W., 1993, Numerical simulations of storm surge inundations in partial areas of the Bohai Sea, Oceanol. Limnol. Sinica, 24 (1), 16-23.

Papers submitted or in revision:

  1. Barsi, L. and Shi, F. Non-hydrostatic modelling of wave breaking using the k-ω turbulence closure with a global stress-limiter, submitted to Ocean Modelling, May, 2021.

  2. Deb, M., Kirby, J. T., Shi, F., Abdolali, A., A surface porosity approach for eliminating artificial ponding in coastal salt marsh simulations, submitted to JGR Earth Surface, Feb 2022.